STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2131Homologs of previously reported genes of unknown function. (870 aa)    
Predicted Functional Partners:
XM1_0745
Putative Nuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   0.736
XM1_3059
Conserved protein of unknown function(containing Haemerythrin-like, metal-binding domain.1-134); Homologs of previously reported genes of unknown function.
 
    0.699
XM1_2985
Putative haemerythrin-like, metal-binding domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
   0.693
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.678
XM1_3647
Hemerythrin; Function of strongly homologous gene; carrier.
 
    0.674
XM1_3055
Putative Adenylate cyclase 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.656
XM1_2130
Putative Signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.653
XM1_3471
Hemerythrin-like protein; Function of strongly homologous gene; carrier.
 
    0.644
rpoB
RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.631
XM1_3045
Cytochrome b subunit of the bc complex; Function of strongly homologous gene; enzyme.
   
 
 0.630
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.