STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2133Predicted Signal transduction protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (384 aa)    
Predicted Functional Partners:
XM1_3971
Putative diguanylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.983
XM1_4279
Putative response regulator (Motif C-terminal to PAS motifs 78-118; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 0.980
XM1_2132
Putative Diguanylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.966
XM1_1318
Putative Response regulator（GGDEF domain,147-323） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 0.959
XM1_2972
Putative two component diguanylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
 0.956
XM1_1922
Putative PAS:GGDEF (Cache domain,34-127; PAS domain,277-392; GGDEF domain,386-558); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
 0.944
XM1_1945
Putative Adenylyl cyclase（Adenylyl cyclase class-3/4/guanylyl cyclase,166-326） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.942
XM1_2511
Homologs of previously reported genes of unknown function.
 
 0.901
XM1_2647
Putative Response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 0.901
XM1_0696
Conserved protein of unknown function （containing a GGDEF domain） Homologs of previously reported genes of unknown function.
 
 0.896
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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