STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2137Homologs of previously reported genes of unknown function. (250 aa)    
Predicted Functional Partners:
petA
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.800
XM1_2136
Homologs of previously reported genes of unknown function.
       0.779
XM1_0305
Cytochrome b/c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.752
ompR-2
DNA-binding response regulator in two-component regulatory system with EnvZ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
 0.745
XM1_2139
Homologs of previously reported genes of unknown function.
 
   
 0.721
yfeX
Deferrochelatase/peroxidase YfeX; Function of strongly homologous gene; putative enzyme.
 
    0.706
XM1_1118
Conserved exported protein of unknown function(Immunoglobulin E-set,23-116); Homologs of previously reported genes of unknown function.
  
    0.678
XM1_3045
Cytochrome b subunit of the bc complex; Function of strongly homologous gene; enzyme.
   
 
 0.655
ctaE
Cytochrome c oxidase subunit III; Function of strongly homologous gene; enzyme.
  
   0.653
norE
Cytochrome c oxidase, subunit III (NorE protein involved in nitric oxide reduction); Function of strongly homologous gene; enzyme.
  
   0.653
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.