STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2143Putative Cytochrome c553; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (252 aa)    
Predicted Functional Partners:
nosY
Membrane protein nosY; Function of strongly homologous gene; transporter.
 
     0.721
XM1_2144
Homologs of previously reported genes of unknown function.
 
     0.714
nosF
ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; enzyme.
 
     0.712
XM1_2142
Putative Cytochrome C4; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    
0.708
mamH
Magnetosome protein MamH; Function of strongly homologous gene; putative membrane component.
  
   
 0.696
nosH
Polyferredoxin; Function of strongly homologous gene; transporter.
 
  
 0.674
XM1_0305
Cytochrome b/c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.646
fixO
Cytochrome C oxidase, CytO subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.646
XM1_4243
Putative taurine catabolism dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.637
nosL
Nitrous oxide reductase accessory protein; Function of strongly homologous gene; enzyme.
 
     0.626
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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