STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2153Putative Na+-dependent transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (286 aa)    
Predicted Functional Partners:
menA
Putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
 
     0.820
ubiE
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
       0.780
nosL
Nitrous oxide reductase accessory protein; Function of strongly homologous gene; enzyme.
       0.773
nosY
Membrane protein nosY; Function of strongly homologous gene; transporter.
       0.773
nosF
ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; enzyme.
     
 0.762
nosH
Polyferredoxin; Function of strongly homologous gene; transporter.
       0.574
XM1_2145
Nitrous oxidase accessory protein; Homologs of previously reported genes of unknown function.
       0.572
nosG
4Fe-4S ferredoxin, iron-sulfur binding; Function of strongly homologous gene; enzyme.
       0.572
XM1_2144
Homologs of previously reported genes of unknown function.
       0.482
XM1_0889
Putative dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.425
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.