STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2179Putative NADH dependant phenylglyoxylate; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (421 aa)    
Predicted Functional Partners:
nasA
Nitrate reductase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.940
XM1_2177
Homologs of previously reported genes of unknown function.
 
     0.930
aor
Tungsten-containing aldehyde ferredoxin oxidoreductase; Function of strongly homologous gene; enzyme.
 
   
 0.881
XM1_2181
Putative Fe-S-cluster-containing hydrogenase components 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
   
 0.830
rubA
Rubredoxin; Function of homologous gene experimentally demonstrated in an other organism; carrier.
 
 
 0.806
nirD
Assimilatory nitrite reductase [NAD(P)H] small subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.800
napA
Nitrate reductase, periplasmic, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
  
 0.793
XM1_3479
Hydrogenase expression/formation protein hupT; Function of strongly homologous gene; phenotype.
 
 
 0.753
XM1_2178
Putative NAD(FAD)-dependent dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    
0.745
XM1_0418
Putative Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.731
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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