STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2186Putative Transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (161 aa)    
Predicted Functional Partners:
fliP
Flagellar biosynthesis protein; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
   
    0.718
XM1_0219
Homologs of previously reported genes of unknown function.
 
     0.644
purB
Adenylosuccinate lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.622
dprA
DNA processing single strand binding protein; Function of strongly homologous gene; factor.
  
    0.592
XM1_2187
Putative Chromosome partitioning ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
    0.581
XM1_0702
Putative enzyme of heme biosynthesis (HemY-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.573
XM1_3904
Putative ferric uptake regulator family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the Fur family.
  
  
 0.566
XM1_0442
Homologs of previously reported genes of unknown function.
  
     0.552
flgA
Flagellar basal body P-ring biosynthesis protein FlgA; Function of strongly homologous gene; structure.
  
  
 0.549
XM1_0092
Homologs of previously reported genes of unknown function.
  
     0.536
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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