STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2205Putative alpha/beta superfamily hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (241 aa)    
Predicted Functional Partners:
XM1_2206
Serine acetyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.601
iscR
DNA-binding transcriptional repressor; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.564
nifS
Cysteine desulfurase; Function of strongly homologous gene; enzyme.
       0.558
bamD
Outer membrane protein assembly factor BamD(Outer membrane protein assembly factor BamD,14-245); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.546
XM1_3496
Conserved protein of unknown function(containing DUF1013 domian,34-169); Homologs of previously reported genes of unknown function.
  
     0.525
rpsU
30S ribosomal protein S21; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bS21 family.
  
   
 0.495
tolB
Protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
     0.494
yidC
Putative Membrane protein insertase YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
     0.479
trpS
Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.476
XM1_0850
Conserved protein of unknown function （contain SEC-C domain） Homologs of previously reported genes of unknown function.
  
    0.466
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.