STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMGCLHydroxymethylglutaryl-CoA lyase, mitochondrial; Function of strongly homologous gene; putative enzyme. (300 aa)    
Predicted Functional Partners:
XM1_2265
Putative Enoyl-CoA hydratase/carnithine racemase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 0.995
XM1_4764
Enoyl-CoA hydratase/carnithine racemase; Function of strongly homologous gene; enzyme.
 0.976
caiD
Enoyl-CoA hydratase/carnithine racemase; Function of strongly homologous gene; putative enzyme.
 0.953
ydbK
Putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.949
atoD
acetoacetyl-CoA transferase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.940
atoA
acetoacetyl-CoA transferase, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.936
acsA
Acetoacetyl-coenzyme A synthetase (Acetoacetate--CoA ligase 1) (Acyl-activating enzyme 1); Function of strongly homologous gene; enzyme.
 
 
 0.927
atoB
acetyl-CoA acetyltransferase(Thiolase,4-394); Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.925
XM1_2487
Putative Beta-oxoacyl-CoA thiolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.925
paaE
Beta-ketoadipyl CoA thiolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.925
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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