STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2279Putative integrase/recombinase y4qK; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family. (297 aa)    
Predicted Functional Partners:
XM1_0085
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     0.606
XM1_0676
Transposase; Function of strongly homologous gene; enzyme.
     0.606
XM1_2390
Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     0.606
XM1_2431
Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     0.606
XM1_2466
Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     0.606
XM1_3718
Transposase; Function of strongly homologous gene; factor.
     0.606
XM1_4302
Transposase; Function of strongly homologous gene; enzyme.
     0.606
XM1_2311
Putative transposase (fragment); Gene remnant; extrachromosomal origin.
     0.582
XM1_0718
Phage integrase family protein; Function of strongly homologous gene; enzyme.
  
     0.487
XM1_2280
Protein of unknown function; Required for the transposition of the insertion element.
       0.478
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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