STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2325Homologs of previously reported genes of unknown function. (159 aa)    
Predicted Functional Partners:
XM1_3665
Suppressor protein SRP40; Function of strongly homologous gene; regulator.
    
 0.850
XM1_1783
Homologs of previously reported genes of unknown function.
   
 0.849
apaG
Protein ApaG; Function of strongly homologous gene; transporter.
  
  
 0.704
XM1_0013
Conserved protein of unknown function (Multidrug resistance efflux transporter 5-106); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.640
XM1_0028
Homologs of previously reported genes of unknown function.
   
 0.640
XM1_2050
Putative Predicted membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
   
 0.620
XM1_2559
Putative Wd40 repeat, subgroup; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 0.620
XM1_4487
Putative TPR repeat-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
   
 0.620
XM1_0658
Putative cation/proton antiporter, Na+/H+ exchanger family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
   
 
 0.606
XM1_3709
Glutamate decarboxylase-like PLP-dependent protein; Function of strongly homologous gene; enzyme.
   
 0.588
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.