STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mamCMagnetosome protein MamC; Function of strongly homologous gene; putative membrane component. (146 aa)    
Predicted Functional Partners:
mamD
Magnetosome protein MamD; Function of strongly homologous gene; putative membrane component.
     
 0.905
mamF
Magnetosome protein MamF; Function of strongly homologous gene; enzyme.
     
 0.811
mms6
Magnetosome protein Mms6; Function of strongly homologous gene; enzyme.
     
 0.659
XM1_2333
Putative Bacterial magnetic particle specificiron-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
     
 0.577
mamE
Magnetosome protein MamE; Function of strongly homologous gene; putative enzyme.
      
 0.570
mamK
Magnetosome cytoskeleton protein MamK; Function of strongly homologous gene; putative enzyme.
      
 0.570
mamM
Magnetosome protein MamM; Function of strongly homologous gene; putative membrane component; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
      
 0.565
mamI
Magnetosome protein MamI; Function of strongly homologous gene; putative membrane component.
      
 0.558
mamJ
Magnetosome protein MamJ; Function of strongly homologous gene; transporter.
      
 0.551
ftsZ-2
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
      
 0.532
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.