STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mamDMagnetosome protein MamD; Function of strongly homologous gene; putative membrane component. (314 aa)    
Predicted Functional Partners:
mamC
Magnetosome protein MamC; Function of strongly homologous gene; putative membrane component.
     
 0.905
mamF
Magnetosome protein MamF; Function of strongly homologous gene; enzyme.
     
 0.810
mms6
Magnetosome protein Mms6; Function of strongly homologous gene; enzyme.
     
 0.659
XM1_2333
Putative Bacterial magnetic particle specificiron-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
     
 0.586
mamE
Magnetosome protein MamE; Function of strongly homologous gene; putative enzyme.
      
 0.570
mamF-2
Magnetosome protein MamF; Function of strongly homologous gene; enzyme.
     
 0.504
mamB
Magnetosome protein MamB; Function of strongly homologous gene; putative transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
      
 0.437
mamB-3
Magnetosome protein MamB; Function of strongly homologous gene; transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
      
 0.437
mamQ
Magnetosome protein MamQ; Function of strongly homologous gene; membrane component.
      
 0.431
mamQ-2
Magnetosome protein MamQ; Function of strongly homologous gene; putative membrane component.
      
 0.431
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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