STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mamFMagnetosome protein MamF; Function of strongly homologous gene; enzyme. (111 aa)    
Predicted Functional Partners:
mamO
Magnetosome protein MamO; Function of strongly homologous gene; putative enzyme.
  
   
 0.849
mamE
Magnetosome protein MamE; Function of strongly homologous gene; putative enzyme.
  
   
 0.836
mamW
Magnetosome protein MamW; Function of strongly homologous gene; membrane component.
      
 0.815
mamC
Magnetosome protein MamC; Function of strongly homologous gene; putative membrane component.
     
 0.811
mamD
Magnetosome protein MamD; Function of strongly homologous gene; putative membrane component.
     
 0.810
mamH
Magnetosome protein MamH; Function of strongly homologous gene; putative membrane component.
 
   
 0.810
mamK
Magnetosome cytoskeleton protein MamK; Function of strongly homologous gene; putative enzyme.
  
   
 0.776
XM1_2333
Putative Bacterial magnetic particle specificiron-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
     
 0.769
XM1_3034
PBPb domain-containing protein; Homologs of previously reported genes of unknown function.
  
     0.726
XM1_1524
Homologs of previously reported genes of unknown function.
  
     0.716
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.