STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mamIMagnetosome protein MamI; Function of strongly homologous gene; putative membrane component. (69 aa)    
Predicted Functional Partners:
mamE
Magnetosome protein MamE; Function of strongly homologous gene; putative enzyme.
     
 0.904
mamH
Magnetosome protein MamH; Function of strongly homologous gene; putative membrane component.
     
 0.838
mamK
Magnetosome cytoskeleton protein MamK; Function of strongly homologous gene; putative enzyme.
     
 0.821
mamL
Magnetosome protein MamL; Function of strongly homologous gene; putative membrane component.
     
 0.766
mamJ
Magnetosome protein MamJ; Function of strongly homologous gene; transporter.
     
 0.745
mamM
Magnetosome protein MamM; Function of strongly homologous gene; putative membrane component; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
     
 0.729
mamN
Magnetosome protein MamN; Function of strongly homologous gene; putative enzyme.
     
 0.729
mamO
Magnetosome protein MamO; Function of strongly homologous gene; putative enzyme.
     
 0.707
mamP
Magnetosome protein MamP; Function of strongly homologous gene; membrane component.
     
 0.667
mms6
Magnetosome protein Mms6; Function of strongly homologous gene; enzyme.
      
 0.570
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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