STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mamEMagnetosome protein MamE; Function of strongly homologous gene; putative enzyme. (728 aa)    
Predicted Functional Partners:
mamK
Magnetosome cytoskeleton protein MamK; Function of strongly homologous gene; putative enzyme.
 
   
 0.959
mamH
Magnetosome protein MamH; Function of strongly homologous gene; putative membrane component.
 
   
 0.926
mamI
Magnetosome protein MamI; Function of strongly homologous gene; putative membrane component.
     
 0.904
mamJ
Magnetosome protein MamJ; Function of strongly homologous gene; transporter.
     
 0.874
mamF-2
Magnetosome protein MamF; Function of strongly homologous gene; enzyme.
  
   
 0.839
mamN
Magnetosome protein MamN; Function of strongly homologous gene; putative enzyme.
 
   
 0.837
mamF
Magnetosome protein MamF; Function of strongly homologous gene; enzyme.
  
   
 0.836
mamO
Magnetosome protein MamO; Function of strongly homologous gene; putative enzyme.
 
 
 
0.836
mamM
Magnetosome protein MamM; Function of strongly homologous gene; putative membrane component; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
   
 0.798
XM1_4173
Putative trypsin-like serine protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.766
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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