STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mamAMagnetosome protein MamA; Function of strongly homologous gene; membrane component. (217 aa)    
Predicted Functional Partners:
mamO
Magnetosome protein MamO; Function of strongly homologous gene; putative enzyme.
 
 
 0.837
XM1_4709
Putative methyltransferase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.743
mamP
Magnetosome protein MamP; Function of strongly homologous gene; membrane component.
   
 0.736
XM1_4687
Putative O-linked N-acetylglucosamine transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.712
mamH
Magnetosome protein MamH; Function of strongly homologous gene; putative membrane component.
 
   
 0.675
mamB
Magnetosome protein MamB; Function of strongly homologous gene; putative transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
     0.672
mamQ
Magnetosome protein MamQ; Function of strongly homologous gene; membrane component.
 
   
 0.670
XM1_2171
TPR repeat-containing protein; Homologs of previously reported genes of unknown function.
 
     0.666
XM1_1485
TPR repeat-containing protein（Tetratricopeptide-like helical,13-178） Function of strongly homologous gene; factor.
 
 
 0.659
XM1_3698
O-linked N-acetylglucosamine transferase; Function of strongly homologous gene; enzyme.
 
 
 0.653
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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