STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bceBABC transporter (permease); Function of strongly homologous gene; transporter. (431 aa)    
Predicted Functional Partners:
XM1_3680
Response regulatory domain-containing protein; Homologs of previously reported genes of unknown function.
 
   0.791
fliM
Flagellar motor switch protein fliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
 
 
 0.790
XM1_2449
Putative hybrid sensor and regulator (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
 
 0.778
XM1_4030
Putative hybrid sensor and regulator (Signal transduction histidine kinase, homodimeric 904-989; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
 
 0.778
XM1_2359
Protein of unknown function; No homology to any previously reported sequences.
       0.773
XM1_4378
Homologs of previously reported genes of unknown function.
  
     0.755
repA
Plasmid replication protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.748
XM1_4717
Flagellin and related hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
  
 0.724
XM1_1368
Homologs of previously reported genes of unknown function; putative membrane component.
  
    0.717
XM1_1536
Putative Flagellar assembly regulator FliX(Flagellar assembly regulator FliX, class II,1-141); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.705
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.