STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2372Putative transcriptional regulatory protein ros; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (137 aa)    
Predicted Functional Partners:
hupB-3
HU, DNA-binding transcriptional regulator, beta subunit; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.780
secE
Putative Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.579
XM1_1966
Conserved protein of unknown function(Uncharacterised domain UPF0070, N-terminal,21-63); Homologs of previously reported genes of unknown function.
  
     0.497
XM1_2369
Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.468
XM1_1420
Uncharacterized protein; Homologs of previously reported genes of unknown function.
  
     0.424
XM1_3118
Conserved protein of unknown function(containing Azospirillum phage Cd, Gp10 domain,13-85); Homologs of previously reported genes of unknown function.
  
     0.412
XM1_0736
Homologs of previously reported genes of unknown function.
  
     0.405
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.