XM1_2391 protein (Magnetospirillum sp. XM1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

XM1_2391

Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (134 aa)

Predicted Functional Partners:

XM1_2392

0.943

XM1_2429

0.763

XM1_0087

0.758

XM1_0506

0.758

XM1_0674

0.758

XM1_2089

0.758

XM1_3716

0.758

XM1_4096

0.758

XM1_4240

0.758

XM1_4300

0.758

Your Current Organism:

Magnetospirillum sp. XM1

NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
XM1_0087	XM1_2391	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.758
XM1_0506	XM1_2391	Transposase; Function of strongly homologous gene; enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.758
XM1_0674	XM1_2391	Transposase; Function of strongly homologous gene; enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.758
XM1_2089	XM1_2391	Transposase; Function of strongly homologous gene; enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.758
XM1_2391	XM1_0087	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.758
XM1_2391	XM1_0506	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Transposase; Function of strongly homologous gene; enzyme.	0.758
XM1_2391	XM1_0674	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Transposase; Function of strongly homologous gene; enzyme.	0.758
XM1_2391	XM1_2089	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Transposase; Function of strongly homologous gene; enzyme.	0.758
XM1_2391	XM1_2392	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.943
XM1_2391	XM1_2429	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.763
XM1_2391	XM1_3716	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.758
XM1_2391	XM1_4096	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Transposase; Function of strongly homologous gene; enzyme.	0.758
XM1_2391	XM1_4240	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.758
XM1_2391	XM1_4300	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.758
XM1_2392	XM1_2391	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.943
XM1_2429	XM1_2391	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.763
XM1_3716	XM1_2391	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.758
XM1_4096	XM1_2391	Transposase; Function of strongly homologous gene; enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.758
XM1_4240	XM1_2391	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.758
XM1_4300	XM1_2391	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.758