STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mamR-2Magnetosome protein MamR; Function of strongly homologous gene; membrane component. (84 aa)    
Predicted Functional Partners:
mamQ-2
Magnetosome protein MamQ; Function of strongly homologous gene; putative membrane component.
     
 0.863
mamB-3
Magnetosome protein MamB; Function of strongly homologous gene; transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
     
 0.862
mamO-2
Magnetosome protein MamO (partial); Function of strongly homologous gene; putative enzyme.
     
 0.629
mamE-2
Magnetosome protein MamE; Function of strongly homologous gene; putative enzyme.
     
 0.512
XM1_2398
Homologs of previously reported genes of unknown function.
       0.484
mamT
Magnetosome protein MamT; Function of strongly homologous gene; membrane component.
     
 0.467
mamS
Magnetosome protein MamS; Function of strongly homologous gene; membrane component.
     
 0.464
mamO
Magnetosome protein MamO; Function of strongly homologous gene; putative enzyme.
     
 0.452
mamP
Magnetosome protein MamP; Function of strongly homologous gene; membrane component.
     
 0.452
mamN
Magnetosome protein MamN; Function of strongly homologous gene; putative enzyme.
     
 0.441
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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