STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mamB-3Magnetosome protein MamB; Function of strongly homologous gene; transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (296 aa)    
Predicted Functional Partners:
mamQ-2
Magnetosome protein MamQ; Function of strongly homologous gene; putative membrane component.
 
   
 0.878
mamR-2
Magnetosome protein MamR; Function of strongly homologous gene; membrane component.
     
 0.862
mamK
Magnetosome cytoskeleton protein MamK; Function of strongly homologous gene; putative enzyme.
 
   
 0.821
mms6
Magnetosome protein Mms6; Function of strongly homologous gene; enzyme.
      
 0.771
mamN
Magnetosome protein MamN; Function of strongly homologous gene; putative enzyme.
 
   
 0.658
mamH
Magnetosome protein MamH; Function of strongly homologous gene; putative membrane component.
  
   
 0.647
mamO-2
Magnetosome protein MamO (partial); Function of strongly homologous gene; putative enzyme.
     
 0.641
recA
DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.637
mamF-2
Magnetosome protein MamF; Function of strongly homologous gene; enzyme.
  
   
 0.628
mamO
Magnetosome protein MamO; Function of strongly homologous gene; putative enzyme.
 
   
 0.621
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (78%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.