STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2418Putative transposase of ISAli3, IS630 family. ORFB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (180 aa)    
Predicted Functional Partners:
tnpF
Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.933
XM1_3023
AAA domain-containing protein; Homologs of previously reported genes of unknown function.
  
 
 0.499
XM1_4043
Putative phage DNA transposition protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
  
 
 0.499
XM1_2414
Homologs of previously reported genes of unknown function.
  
    0.484
XM1_2416
Putative Serine/threonine protein kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.484
XM1_2435
Conserved protein of unknown function (Transposase, IS66 29-101); Homologs of previously reported genes of unknown function.
  
    0.481
XM1_2415
Homologs of previously reported genes of unknown function.
       0.480
XM1_2419
Putative Carbohydrate-selective porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.405
feoA
Ferrous iron transport system protein A; Function of strongly homologous gene; putative transporter.
       0.403
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.