STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2419Putative Carbohydrate-selective porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (465 aa)    
Predicted Functional Partners:
feoA
Ferrous iron transport system protein A; Function of strongly homologous gene; putative transporter.
       0.774
XM1_2125
Homologs of previously reported genes of unknown function.
  
     0.696
XM1_4359
Putative oxidoreductase, Radical SAM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.679
feoB
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
  
  
 0.671
XM1_0218
Putative Outer membrane protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
     
 0.614
XM1_1991
Putative Nucleoside phosphorylase(Hopanoid-associated phosphorylase HpnG,22-224); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.587
XM1_2127
Putative membrane protein actII-3; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.580
XM1_0421
Homologs of previously reported genes of unknown function.
  
     0.555
XM1_4327
Putative carbohydrate-selective porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
  
 
0.548
XM1_3805
Carbohydrate-selective porin; Function of strongly homologous gene; transporter.
  
  
 
0.542
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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