STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhaSAldehyde dehydrogenase DhaS; Function of strongly homologous gene; enzyme; Belongs to the aldehyde dehydrogenase family. (501 aa)    
Predicted Functional Partners:
XM1_1681
Putative Phenylacetate-CoA ligase(AMP-dependent synthetase/ligase,116-276); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.939
paaK
phenylacetyl-CoA ligase(AMP-dependent synthetase/ligase,85-356); Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
   
 0.939
paaK-2
phenylacetyl-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
   
 0.939
XM1_3898
Putative amidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.910
paaI
Phenylacetate pathway hotdog-fold thioesterase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.906
fmt
10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
    
 0.711
XM1_2527
Putative ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.675
ydbK
Putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.621
XM1_2530
Putative Radical SAM protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.608
XM1_2531
Putative Quinohemoprotein amine dehydrogenase subunit alpha; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.608
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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