STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2628Putative Repressor protein C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (255 aa)    
Predicted Functional Partners:
XM1_2627
Protein of unknown function; No homology to any previously reported sequences.
       0.543
XM1_2618
Protein of unknown function; No homology to any previously reported sequences.
     
 0.535
XM1_2624
Homologs of previously reported genes of unknown function.
     
 0.490
XM1_2629
Homologs of previously reported genes of unknown function.
       0.488
XM1_2630
Protein of unknown function; No homology to any previously reported sequences.
       0.488
XM1_2631
Homologs of previously reported genes of unknown function.
       0.488
hemD
Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
     0.482
XM1_0030
Type III restriction enzyme, res subunit; Function of strongly homologous gene; enzyme.
  
    0.469
XM1_2632
Homologs of previously reported genes of unknown function.
       0.465
recA
DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.456
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.