STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2652Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (2034 aa)    
Predicted Functional Partners:
fabD
malonyl-CoA-[acyl-carrier-protein] transacylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
0.998
XM1_1983
Putative Phosphopantetheinyl transferase(4'-phosphopantetheinyl transferase,81-181); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the P-Pant transferase superfamily.
 
 0.992
XM1_1064
Formate dehydrogenase beta subunit; Function of strongly homologous gene; enzyme.
  
 0.977
hoxF
NAD-reducing hydrogenase HoxS subunit alpha (HoxF); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.977
XM1_1982
Putative non-ribosomal peptide synthetase(Non-ribosomal peptide synthetase C-terminal,627-1318); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the ATP-dependent AMP-binding enzyme family.
 0.957
XM1_3492
Putative Thioesterase superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.954
XM1_0305
Cytochrome b/c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 
 0.952
XM1_1424
Putative NADH-ubiquinone oxidoreductase 40 kDa subunit(NAD(P)-binding domain,4-255); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.951
XM1_0600
Putative 4-hydroxybenzoyl CoA thioesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.947
XM1_1072
Putative thioesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.947
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.