STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2686Putative ABC-type dipeptide transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (549 aa)    
Predicted Functional Partners:
XM1_2685
ABC-type dipeptide/oligopeptide/nickel transport system protein; Function of strongly homologous gene; transporter.
 
 0.999
appC
Oligopeptide transport system permease protein AppC; Function of strongly homologous gene; transporter.
 
 0.998
ydbK
Putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.897
XM1_1481
Homologs of previously reported genes of unknown function.
  
     0.702
XM1_2900
Putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.634
XM1_0535
Putative oligopeptide transporter subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
0.607
XM1_2687
Homologs of previously reported genes of unknown function.
       0.584
XM1_3196
Protein of unknown function; No homology to any previously reported sequences.
  
     0.553
XM1_0385
Homologs of previously reported genes of unknown function.
  
     0.543
XM1_1348
Putative phasin family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.526
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.