STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2692Putative TRAP-type C4-dicarboxylate transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (347 aa)    
Predicted Functional Partners:
dctM-2
TRAP-type C4-dicarboxylate transport system, large permease component DctM; Function of strongly homologous gene; transporter.
 
  
 0.848
dctQ-2
TRAP-type C4-dicarboxylate transport system, small permease component DctQ; Function of strongly homologous gene; transporter.
 
  
 0.788
XM1_2691
Putative Adenylate cyclase 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.773
dctM
TRAP-type mannitol/chloroaromatic compound transport system, large permease component; Function of strongly homologous gene; transporter.
 
   
 0.708
XM1_4632
Putative transporter TrapT family, fused dctQ-M subunits, C4-dicarboxylate transport; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.679
XM1_4633
Putative TRAP-type uncharacterized transport system, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   
 0.537
XM1_2690
Homologs of previously reported genes of unknown function.
       0.506
XM1_1888
Uncharacterized protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
   
 0.473
XM1_0318
Putative TRAP-type uncharacterized transport system (TAXI family), periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   
 0.470
XM1_3394
TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 0.423
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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