STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2745Putative Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (612 aa)    
Predicted Functional Partners:
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.879
boxC
Benzoyl-CoA-dihydrodiol lyase; Function of strongly homologous gene; enzyme.
 
 
 0.794
boxB
Benzoyl-CoA oxygenase component B; Function of strongly homologous gene; enzyme.
  
   
 0.714
XM1_3883
Putative transcription regulator protein, MarR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
   
 0.648
XM1_2748
Putative ABC-type branched-chain amino acid transport system protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
  
    0.643
livF-2
Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.641
braF
Putative High-affinity branched-chain amino acid transport ATP-binding protein BraF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.641
XM1_2749
Putative Branched chain amino acid ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
       0.641
XM1_1064
Formate dehydrogenase beta subunit; Function of strongly homologous gene; enzyme.
    
 
 0.634
hoxF
NAD-reducing hydrogenase HoxS subunit alpha (HoxF); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 
 0.634
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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