STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2760Putative Histone deacetylase superfamily protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (310 aa)    
Predicted Functional Partners:
XM1_4208
Conserved protein of unknown function (Putative SET domain protein); Homologs of previously reported genes of unknown function.
  
 0.799
XM1_1756
Putative Helicase(SNF2-related,6-226)1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
 0.776
XM1_2809
Putative Helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
 0.776
XM1_2759
Homologs of previously reported genes of unknown function.
       0.773
cobB-2
Deacetylase of acetyl-CoA synthetase, NAD-dependent(Sirtuin family,7-234); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the sirtuin family. Class III subfamily.
    
 
 0.755
XM1_2286
Putative Acetyl-CoA hydrolase/transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
      0.712
hmrR
Heavy metal-dependent transcriptional regulator, MerR family; Function of strongly homologous gene; regulator.
    
 0.704
htpG
Molecular chaperone HSP90 family; Molecular chaperone. Has ATPase activity.
    
 0.704
czcC-2
Cobalt-zinc-cadmium resistance protein CzcC; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 
   
 0.696
XM1_2559
Putative Wd40 repeat, subgroup; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 0.678
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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