STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
copRPutative DNA-binding response regulator in two-component regulatory system with CusS; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (225 aa)    
Predicted Functional Partners:
XM1_2768
Putative Signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.972
XM1_3529
Putative Sensor protein czcS; Member of a two-component regulatory system.
 
 0.828
XM1_1590
Homologs of previously reported genes of unknown function.
  
 
 0.761
XM1_3256
Protein of unknown function; No homology to any previously reported sequences.
  
 
0.761
XM1_4319
Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.761
XM1_1591
Membrane protein of unknown function(PAS domain,112-232); No homology to any previously reported sequences.
  
 
 0.757
XM1_4009
Putative histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
 
 0.748
XM1_1178
Signal transduction histidine kinase（ATPase-like, ATP-binding domain,296-432） Function of strongly homologous gene; receptor.
 
 
 0.689
XM1_4153
Putative regulator two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.686
XM1_2061
Putative Signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
0.684
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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