STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cutCXanthine dehydrogenase, Fe-S binding subunit; Function of strongly homologous gene; carrier. (153 aa)    
Predicted Functional Partners:
XM1_1619
Aerobic carbon-monoxide dehydrogenase large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.993
XM1_2478
Putative xanthine dehydrogenase, molybdenum binding subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.992
hcrA
Putative 4-hydroxybenzoyl-CoA reductase subunit alpha; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.992
xdhA-2
Xanthine dehydrogenase, small subunit (fragment of part 1); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.991
XM1_2780
Putative Aerobic-type carbon monoxide dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.983
XM1_2781
Putative enzyme for molybdopterin cofactor synthesis required for xanthine dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.949
hcrB
Putative oxidoreductase with FAD-binding domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.926
XM1_1925
Ald_Xan_dh_C domain-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.860
XM1_2742
Putative carbon monoxide dehydrogenase accessory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
  
 0.843
XM1_1197
Isoquinoline 1-oxidoreductase subunit beta; Function of strongly homologous gene; enzyme.
 
 0.820
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.