STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csdCysteine sulfinate desulfinase; Function of strongly homologous gene; enzyme. (400 aa)    
Predicted Functional Partners:
XM1_2783
Putative Fe-S cluster formation NifU-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.961
trxB
Thioredoxin reductase, FAD/NAD(P)-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.933
yumC
Ferredoxin--NADP reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.911
cutC
Xanthine dehydrogenase, Fe-S binding subunit; Function of strongly homologous gene; carrier.
  
  
 0.810
iscU
Scaffold protein;iron-binding protein believed to be involved in Fe-S protein formation or repair; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 
 0.787
XM1_2781
Putative enzyme for molybdopterin cofactor synthesis required for xanthine dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.786
XM1_2780
Putative Aerobic-type carbon monoxide dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.785
nifQ
NifQ protein,Protein involved in biosynthesis of iron-molybdenum cofactor of nitrogenase; Function of homologous gene experimentally demonstrated in an other organism; factor.
  
 
 0.779
nifQ-3
NifQ protein,Protein involved in biosynthesis of iron-molybdenum cofactor of nitrogenase; Function of strongly homologous gene; factor.
  
 
 0.779
XM1_1893
Protein of unknown function(Domain of unknown function DUF59,4-78); No homology to any previously reported sequences.
 
  
 0.606
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.