STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2839Putative transcriptional regulator HTH-XRE family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (168 aa)    
Predicted Functional Partners:
hupB-5
HU, DNA-binding transcriptional regulator, beta subunit; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.701
ros
Transcriptional regulatory protein ros; Function of strongly homologous gene; regulator.
       0.701
XM1_0878
Putative DNA polymerase III, delta subunit (holA); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.668
XM1_3497
Conserved protein of unknown function(containing AsmA_2 domain,802-1041); Homologs of previously reported genes of unknown function.
  
     0.634
XM1_1491
Homologs of previously reported genes of unknown function.
  
     0.631
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.610
XM1_1490
Homologs of previously reported genes of unknown function.
  
     0.589
XM1_0790
Homologs of previously reported genes of unknown function.
  
   
 0.588
XM1_3496
Conserved protein of unknown function(containing DUF1013 domian,34-169); Homologs of previously reported genes of unknown function.
  
     0.572
XM1_3542
Protein of unknown function; No homology to any previously reported sequences.
  
     0.548
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.