STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
radCDNA repair protein RadC homolog radC; Function of strongly homologous gene; enzyme. (198 aa)    
Predicted Functional Partners:
XM1_3837
Putative phosphoribosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.746
XM1_4218
Putative septum formation protein (Maf-like protein); Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
 
  
 0.715
XM1_3649
ComEC; Function of strongly homologous gene; factor.
 
  
 0.712
mreC
Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
  
 0.697
XM1_0832
Conserved protein of unknown function （maf-like protein） Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.644
XM1_2842
Putative Acyltransferase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.552
dprA
DNA processing single strand binding protein; Function of strongly homologous gene; factor.
  
  
 0.552
XM1_0200
Signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
 
    0.522
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
 
   
 0.512
XM1_1262
Putative Serine phosphatase RsbU(GAF domain,29-176;Protein phosphatase 2C-like,228-414); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
    0.502
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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