STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2847Putative glyoxalase-like domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (153 aa)    
Predicted Functional Partners:
XM1_2846
Homologs of previously reported genes of unknown function.
       0.784
XM1_2848
Homologs of previously reported genes of unknown function.
       0.784
XM1_2849
Putative oxoacyl-(acyl carrier protein) reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.607
purF
Amidophosphoribosyltransferase purF; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
       0.583
sdhC
Succinate dehydrogenase / fumarate reductase, cytochrome b subunit; Function of strongly homologous gene; enzyme.
  
  
 0.557
nuoD
NADH-quinone oxidoreductase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
  
  
 0.552
gloB
Hydroxyacylglutathione hydrolase(Hydroxyacylglutathione hydrolase,.6-257); Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
    
 0.534
XM1_2851
Conserved protein of unknown function (Colicin V production, CvpA 9-150); Homologs of previously reported genes of unknown function.
       0.496
rutE
Oxidoreductase subunit of the alternative pyrimidine degradation pathway; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.467
bluB
5,6-dimethylbenzimidazole synthase(5,6-dimethylbenzimidazole synthase BluB,15-215); Function of strongly homologous gene; enzyme.
  
  
 0.467
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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