STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2859Homologs of previously reported genes of unknown function. (317 aa)    
Predicted Functional Partners:
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
 
     0.849
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.780
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.780
XM1_0585
Homologs of previously reported genes of unknown function.
  
     0.728
XM1_1943
Putative Transcriptional regulatory protein prrA（CheY-like superfamily,138-223） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.718
XM1_1645
Uncharacterized protein; Homologs of previously reported genes of unknown function.
  
     0.655
XM1_2769
Putative Periplasmic protein TonB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.631
XM1_2682
Homologs of previously reported genes of unknown function.
  
     0.619
XM1_1462
Homologs of previously reported genes of unknown function.
  
     0.587
XM1_0317
Homologs of previously reported genes of unknown function.
  
     0.571
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.