STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glkGlucokinase; Function of strongly homologous gene; enzyme; Belongs to the bacterial glucokinase family. (324 aa)    
Predicted Functional Partners:
pgi
Glucosephosphate isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the GPI family.
    
 0.942
pgm
Phosphoglucomutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.919
tktA
Transketolase (TK); Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
    
 0.883
tal
Putative transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
    
 0.855
fda
Fructose-1,6-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
     
 0.839
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
     
 0.832
XM1_0927
Putative transketolase N-terminal section; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
  0.800
XM1_0928
Putative transketolase C-terminal section; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
  0.800
XM1_1807
Putative 1-deoxy-D-xylulose-5-phosphate synthase(Transketolase-like, C-terminal,187-310); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
  0.800
XM1_1808
Putative transketolase N-terminal section(Transketolase, N-termina,20-275); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
  0.800
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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