STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2912Conserved protein of unknown function (UDP-Glycosyltransferase/glycogen phosphorylase 275-509; Homologs of previously reported genes of unknown function. (1202 aa)    
Predicted Functional Partners:
nuoM
NADH-quinone oxidoreductase subunit M; Function of strongly homologous gene; enzyme.
  
 
 0.793
XM1_3698
O-linked N-acetylglucosamine transferase; Function of strongly homologous gene; enzyme.
 
 
 0.790
XM1_2759
Homologs of previously reported genes of unknown function.
 
  
 0.771
XM1_4709
Putative methyltransferase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.716
XM1_2128
Homologs of previously reported genes of unknown function.
  
   
 0.666
ppiB
Peptidyl prolyl cis-trans isomerase (rotamase B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 0.652
ppiB-2
Peptidyl prolyl cis-trans isomerase (rotamase B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 0.652
XM1_2913
Putative indole pyruvate ferredoxin/flavodoxin oxidoreductase subunit iorA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.651
XM1_4677
Conserved protein of unknown function (alpha/beta-Hydrolases 1-255); Homologs of previously reported genes of unknown function.
  
     0.651
XM1_4715
Putative tetratricopeptide repeat-containing domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
 
 0.646
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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