STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2917Putative methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (266 aa)    
Predicted Functional Partners:
XM1_2918
Homologs of previously reported genes of unknown function.
       0.816
ispB
Octaprenyl diphosphate synthase ispB; Function of strongly homologous gene; enzyme; Belongs to the FPP/GGPP synthase family.
       0.656
rsmL
Ribosomal RNA small subunit methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.632
XM1_2920
Putative response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.525
XM1_2919
Putative blue-light-activated sensor histidine kinase (FixL-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.518
XM1_3086
Putative Endonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.506
XM1_4358
Putative excinuclease ABC C subunit domain protein (UvrABC); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.506
XM1_3204
DNA polymerase III, delta prime subunit; Function of strongly homologous gene; enzyme.
 
    0.492
rnr
Putative Ribonuclease R(Ribonuclease II/R,260-591); 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
 
     0.448
sdhB
Succinate dehydrogenase / fumarate reductase, iron-sulfur subunit; Function of homologous gene experimentally demonstrated in an other organism; carrier.
   
   0.419
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.