STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2931N-formylglutamate amidohydrolase; Function of strongly homologous gene; enzyme. (315 aa)    
Predicted Functional Partners:
pat
Phosphinothricin N-acetyltransferase; Function of strongly homologous gene; enzyme.
 
     0.843
XM1_0375
Putative ATP-dependent DNA/RNA helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.488
XM1_0288
Homologs of previously reported genes of unknown function.
  
     0.478
XM1_0743
Putative protein associated with cation transport, ChaC-like; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.
 
     0.444
XM1_1862
Putative cation transport protein chaC-related(ChaC-like protein,7-175); Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.
 
     0.443
XM1_4215
Homologs of previously reported genes of unknown function; Belongs to the UPF0262 family.
 
     0.416
UspA
Universal stress protein UspA; Function of strongly homologous gene; factor.
  
     0.413
XM1_0762
Putative transcriptional regulator, HTH-XRE family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
     0.401
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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