STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2999Homologs of previously reported genes of unknown function. (279 aa)    
Predicted Functional Partners:
XM1_2998
Protein of unknown function; No homology to any previously reported sequences.
       0.752
fliE
Flagellar hook-basal body complex protein FliE; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
  
 0.726
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
  
 0.669
FliF
Conserved exported protein of unknown function(Cytochrome c domain,10-223); The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
    0.628
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
   
 0.626
fliI
Flagellum-specific ATP synthase; Function of strongly homologous gene; structure.
 
  
 0.611
czcA-2
Putative Flagellar hook protein FlgE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
  
 0.609
XM1_1420
Uncharacterized protein; Homologs of previously reported genes of unknown function.
  
     0.604
XM1_1247
Homologs of previously reported genes of unknown function.
  
     0.591
XM1_1411
Putative Glutathione S-transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.571
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.