STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3034PBPb domain-containing protein; Homologs of previously reported genes of unknown function. (243 aa)    
Predicted Functional Partners:
XM1_3033
Signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
       0.784
mamF-2
Magnetosome protein MamF; Function of strongly homologous gene; enzyme.
  
     0.731
mamF
Magnetosome protein MamF; Function of strongly homologous gene; enzyme.
  
     0.726
mamO
Magnetosome protein MamO; Function of strongly homologous gene; putative enzyme.
  
  
 0.722
mamF-3
Magnetosome protein MamF; Function of strongly homologous gene; membrane component.
  
     0.720
mamH
Magnetosome protein MamH; Function of strongly homologous gene; putative membrane component.
  
   
 0.686
XM1_4202
Conserved protein of unknown function (Integrase-like, catalytic core 247-449); Homologs of previously reported genes of unknown function.
  
     0.625
XM1_1625
Homologs of previously reported genes of unknown function.
  
     0.618
XM1_0710
Homologs of previously reported genes of unknown function.
  
     0.605
XM1_0890
Conserved protein of unknown function （contain Ribonuclease H-like domain） Homologs of previously reported genes of unknown function.
  
     0.600
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.