STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3046Protein of unknown function; No homology to any previously reported sequences. (167 aa)    
Predicted Functional Partners:
XM1_3045
Cytochrome b subunit of the bc complex; Function of strongly homologous gene; enzyme.
       0.850
XM1_3048
Heme/copper-type cytochrome/quinol oxidases, subunit; Function of strongly homologous gene; enzyme.
       0.614
ctaB
Protoheme IX farnesyltransferase 2; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.606
XM1_3044
Thioredoxin domain-containing protein; Homologs of previously reported genes of unknown function.
       0.603
XM1_3047
Putative Permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.603
XM1_3040
Protein of unknown function; No homology to any previously reported sequences.
       0.439
XM1_3042
Heme/copper-type cytochrome/quinol oxidase, subunit 1; Function of strongly homologous gene; enzyme.
       0.438
XM1_3041
Heme/copper-type cytochrome/quinol oxidase, subunit 2; Function of strongly homologous gene; enzyme.
       0.433
XM1_3049
Putative RNA polymerase sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the sigma-70 factor family. ECF subfamily.
       0.406
XM1_3050
Protein of unknown function; No homology to any previously reported sequences.
       0.406
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.