STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hssHomospermidine synthase; Function of strongly homologous gene; enzyme. (467 aa)    
Predicted Functional Partners:
XM1_2016
Putative Lysine/ornithine decarboxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
     0.642
XM1_2966
Conserved protein of unknown function (phosphatases II 8-172); Homologs of previously reported genes of unknown function.
  
     0.525
XM1_0596
Homologs of previously reported genes of unknown function.
  
     0.496
XM1_0275
Putative ATP-dependent RNA helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the DEAD box helicase family.
   
    0.412
XM1_4271
Putative RNA pseudouridine synthase(rluC/rluD); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.410
rhlE
ATP-dependent RNA helicase RhlE; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the DEAD box helicase family.
   
    0.405
rhlE-2
RNA helicase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the DEAD box helicase family.
   
    0.405
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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