STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3094HTH lysR-type domain-containing protein; Homologs of previously reported genes of unknown function; Belongs to the LysR transcriptional regulatory family. (327 aa)    
Predicted Functional Partners:
XM1_3093
Putative Acetyltransferase, GNAT family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.786
XM1_3092
Protein of unknown function; No homology to any previously reported sequences.
 
     0.721
XM1_2052
Homologs of previously reported genes of unknown function.
  
     0.604
XM1_1114
Transcriptional regulator(Winged helix-turn-helix transcription repressor DNA-binding,6-286); Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.592
XM1_4298
Homologs of previously reported genes of unknown function.
  
   
 0.587
XM1_0572
Putative transcriptional regulator HdfR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.555
dmlR
HTH-type transcriptional regulator DmlR; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.523
XM1_3091
Protein of unknown function; No homology to any previously reported sequences.
       0.514
gltB
Glutamate synthase (NADPH) large chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.506
gltB-3
Glutamate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.506
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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