STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3102Uncharacterized protein; Homologs of previously reported genes of unknown function. (284 aa)    
Predicted Functional Partners:
XM1_3103
SGNH_hydro domain-containing protein; Homologs of previously reported genes of unknown function.
       0.661
XM1_3104
Putative sensor histidine kinase with a PAS domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.645
hoxA
Hydrogenase transcriptional regulatory protein HoxA; Function of strongly homologous gene; regulator.
       0.639
XM1_3101
Putative 3-phenylpropionic transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.558
XM1_1099
Putative Glycosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.539
XM1_3106
Putative Zn-dependent hydrolases of the beta-lactamase fold; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.523
yfdH
Bactoprenol glucosyl transferase; Function of homologous gene experimentally demonstrated in an other organism; extrachromosomal origin.
 
  
 0.505
XM1_3092
Protein of unknown function; No homology to any previously reported sequences.
  
     0.494
XM1_0988
Glycosyltransferase, group 2 family protein; Function of strongly homologous gene; enzyme.
 
  
 0.449
XM1_2491
Putative Glycosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.439
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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