STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3133Conserved hypothetical protein(containing Ubiquinol-cytochrome c chaperone, CBP3 domain,9-184); Homologs of previously reported genes of unknown function. (187 aa)    
Predicted Functional Partners:
XM1_3134
Protein of unknown function; No homology to any previously reported sequences.
 
     0.853
rpmF
50S ribosomal subunit protein L32; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bL32 family.
       0.651
XM1_3132
Conserved protein of unknown function(containing Lipoprotein SmpA/OmlA domain,31-106;); Homologs of previously reported genes of unknown function.
       0.647
plsX
Fatty acid/phospholipid synthesis protein, methyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
       0.579
XM1_3066
Protein of unknown function; No homology to any previously reported sequences.
  
     0.564
fabH
3-oxoacyl-[acyl-carrier-protein] synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
       0.558
XM1_0209
Homologs of previously reported genes of unknown function.
  
     0.549
XM1_3131
Protein of unknown function; No homology to any previously reported sequences.
       0.535
XM1_4639
Putative YbaK/aminoacyl-tRNA synthetase-associated domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.535
XM1_1265
Putative hydrolase or acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.528
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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