STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3144Uncharacterized protein; Homologs of previously reported genes of unknown function. (368 aa)    
Predicted Functional Partners:
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
  
  
 0.882
ftsQ
Cell division protein FtsQ（Cell division protein FtsQ/DivIB,172-288） Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
  
 0.881
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
  
 0.776
ddlB
D-alanine:D-alanine ligase（D-alanine--D-alanine ligase,1-304） Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
  
 0.727
XM1_1061
UDP-N-acetylmuramate-alanine ligase; Function of strongly homologous gene; enzyme.
  
  
 0.685
murC
UDP-N-acetylmuramate:L-alanine ligase（UDP-N-acetylmuramate-alanine ligase,1-460） Cell wall formation; Belongs to the MurCDEF family.
  
  
 0.685
ftsW
Lipid II flippase FtsW (Cell division protein FtsW; Function of homologous gene experimentally demonstrated in an other organism; membrane component; Belongs to the SEDS family.
  
  
 0.630
mrdB
Cell wall shape-determining protein mrdB; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
  
 0.630
XM1_3143
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate.
 
   
 0.610
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
  
 
 0.598
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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